IL_8BR8_020

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_020 not in the Motif Atlas

Geometric match to IL_5J7L_269

Geometric discrepancy: 0.1823

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8BR8|1|Lt|C|475
8BR8|1|Lt|C|476
*
8BR8|1|Lt|G|493
8BR8|1|Lt|C|494
8BR8|1|Lt|G|495

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LM

60S ribosomal protein L13

Chain LR

Ribosomal protein L18

Chain Lc

60S ribosomal protein L29