IL_8BR8_027

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGG*UCAUC

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|G|625, 8BR8|1|Lt|C|637, 8BR8|1|Lt|A|638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_027 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0759

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8BR8|1|Lt|G|624
8BR8|1|Lt|G|625
8BR8|1|Lt|G|626
*
8BR8|1|Lt|U|636
8BR8|1|Lt|C|637
8BR8|1|Lt|A|638
8BR8|1|Lt|U|639
8BR8|1|Lt|C|640

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LO

Ribosomal protein L15

Chain LQ

Ribosomal protein L17

Chain Lk

Ribosomal protein L37