IL_8BR8_031
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_031 not in the Motif Atlas
- Geometric match to IL_4V9F_033
- Geometric discrepancy: 0.0826
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BR8|1|Lt|C|708
8BR8|1|Lt|G|709
8BR8|1|Lt|U|710
8BR8|1|Lt|A|711
8BR8|1|Lt|G|712
*
8BR8|1|Lt|C|765
8BR8|1|Lt|G|766
8BR8|1|Lt|A|767
8BR8|1|Lt|A|768
8BR8|1|Lt|G|769
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LE
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- Ribosomal protein L5
- Chain LH
- Ribosomal protein L7
- Chain LK
- Ribosomal protein L10
- Chain LT
- 60S ribosomal protein L18a
- Chain LU
- Ribosomal protein L21
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