IL_8BR8_033
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCGCU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_033 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.2402
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8BR8|1|Lt|G|714
8BR8|1|Lt|C|715
8BR8|1|Lt|G|716
8BR8|1|Lt|C|717
8BR8|1|Lt|U|718
*
8BR8|1|Lt|A|759
8BR8|1|Lt|A|760
8BR8|1|Lt|A|761
8BR8|1|Lt|C|762
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LE
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- Ribosomal protein L5
- Chain LK
- Ribosomal protein L10
- Chain LU
- Ribosomal protein L21
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