IL_8BR8_047

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_047 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.1513

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8BR8|1|Lt|G|1176
8BR8|1|Lt|G|1177
8BR8|1|Lt|U|1178
8BR8|1|Lt|U|1179
*
8BR8|1|Lt|A|1470
8BR8|1|Lt|C|1471

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LG

Ribosomal protein L39

Chain LY

Ribosomal protein L23A

Chain Lk

Ribosomal protein L37