IL_8BR8_059

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8BR8|1|Lt|G|1823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_059 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1336

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BR8|1|Lt|A|1533
8BR8|1|Lt|G|1534
8BR8|1|Lt|U|1535
8BR8|1|Lt|C|1536
8BR8|1|Lt|G|1537
8BR8|1|Lt|G|1538
*
8BR8|1|Lt|C|1821
8BR8|1|Lt|U|1822
8BR8|1|Lt|G|1823
8BR8|1|Lt|U|1824

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LW

Ribosomal protein L23