IL_8BR8_064

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGAGGG*CGCUGGCG

Length

14 nucleotides

Bulged bases

8BR8|1|Lt|G|1648, 8BR8|1|Lt|C|1663, 8BR8|1|Lt|C|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_064 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1443

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8BR8|1|Lt|C|1645
8BR8|1|Lt|G|1646
8BR8|1|Lt|A|1647
8BR8|1|Lt|G|1648
8BR8|1|Lt|G|1649
8BR8|1|Lt|G|1650
*
8BR8|1|Lt|C|1661
8BR8|1|Lt|G|1662
8BR8|1|Lt|C|1663
8BR8|1|Lt|U|1664
8BR8|1|Lt|G|1665
8BR8|1|Lt|G|1666
8BR8|1|Lt|C|1667
8BR8|1|Lt|G|1668

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain Lq

Ribosomal protein L37a

Chain St

Small subunit ribosomal RNA; SSU rRNA