IL_8BR8_068

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GACCG*CCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_068 not in the Motif Atlas

Geometric match to IL_5T83_002

Geometric discrepancy: 0.245

The information below is about IL_5T83_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_83497.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8BR8|1|Lt|G|1694
8BR8|1|Lt|A|1695
8BR8|1|Lt|C|1696
8BR8|1|Lt|C|1697
8BR8|1|Lt|G|1698
*
8BR8|1|Lt|C|1723
8BR8|1|Lt|C|1724
8BR8|1|Lt|C|1725

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lu

Transfer RNA; tRNA

Chain St

Small subunit ribosomal RNA; SSU rRNA