IL_8BR8_069

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UCACCG*CCGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_069 not in the Motif Atlas

Geometric match to IL_4QLM_002

Geometric discrepancy: 0.3556

The information below is about IL_4QLM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8BR8|1|Lt|U|1699
8BR8|1|Lt|C|1700
8BR8|1|Lt|A|1701
8BR8|1|Lt|C|1702
8BR8|1|Lt|C|1703
8BR8|1|Lt|G|1704
*
8BR8|1|Lt|C|1717
8BR8|1|Lt|C|1718
8BR8|1|Lt|G|1719
8BR8|1|Lt|A|1720
8BR8|1|Lt|A|1721
8BR8|1|Lt|G|1722

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain Lj

Ribosomal protein L36-1

Chain Lu

Transfer RNA; tRNA