IL_8BR8_071

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_071 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1234

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

8BR8|1|Lt|G|1764
8BR8|1|Lt|C|1765
*
8BR8|1|Lt|G|1795
8BR8|1|Lt|C|1796
8BR8|1|Lt|A|1797
8BR8|1|Lt|U|1798

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lo

60S ribosomal protein L41