IL_8BR8_072

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCAAAUGCCUCG*CGUG

Length

16 nucleotides

Bulged bases

8BR8|1|Lt|A|1769, 8BR8|1|Lt|C|1775, 8BR8|1|Lt|U|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_072 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.1807

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BR8|1|Lt|C|1765
8BR8|1|Lt|C|1766
8BR8|1|Lt|A|1767
8BR8|1|Lt|A|1768
8BR8|1|Lt|A|1769
8BR8|1|Lt|U|1770
8BR8|1|Lt|G|1771
8BR8|1|Lt|C|1772
8BR8|1|Lt|C|1773
8BR8|1|Lt|U|1774
8BR8|1|Lt|C|1775
8BR8|1|Lt|G|1776
*
8BR8|1|Lt|C|1792
8BR8|1|Lt|G|1793
8BR8|1|Lt|U|1794
8BR8|1|Lt|G|1795

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain Lo

60S ribosomal protein L41

Chain St

Small subunit ribosomal RNA; SSU rRNA