IL_8BR8_085

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCUUG*UGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_085 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.3082

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8BR8|1|Lt|G|2247
8BR8|1|Lt|C|2248
8BR8|1|Lt|U|2249
8BR8|1|Lt|U|2250
8BR8|1|Lt|G|2251
*
8BR8|1|Lt|U|2285
8BR8|1|Lt|G|2286
8BR8|1|Lt|A|2287
8BR8|1|Lt|U|2288

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains