IL_8BR8_086

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_086 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1519

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8BR8|1|Lt|G|2251
8BR8|1|Lt|U|2252
8BR8|1|Lt|G|2253
*
8BR8|1|Lt|U|2281
8BR8|1|Lt|U|2282
8BR8|1|Lt|U|2283
8BR8|1|Lt|U|2284
8BR8|1|Lt|U|2285

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3