IL_8BR8_089

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8BR8|1|Lt|G|2367, 8BR8|1|Lt|A|2368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_089 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1019

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BR8|1|Lt|C|2302
8BR8|1|Lt|U|2303
8BR8|1|Lt|C|2304
*
8BR8|1|Lt|G|2365
8BR8|1|Lt|U|2366
8BR8|1|Lt|G|2367
8BR8|1|Lt|A|2368
8BR8|1|Lt|G|2369

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LW

Ribosomal protein L23