IL_8BR8_090

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CU*AUCG

Length

6 nucleotides

Bulged bases

8BR8|1|Lt|U|2363, 8BR8|1|Lt|C|2364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_090 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.0716

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8BR8|1|Lt|C|2304
8BR8|1|Lt|U|2305
*
8BR8|1|Lt|A|2362
8BR8|1|Lt|U|2363
8BR8|1|Lt|C|2364
8BR8|1|Lt|G|2365

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LP

Ribosomal protein L13a

Chain LW

Ribosomal protein L23