IL_8BR8_104

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGUACG*CUGAG

Length

11 nucleotides

Bulged bases

8BR8|1|Lt|G|2668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_104 not in the Motif Atlas

Geometric match to IL_4V9F_099

Geometric discrepancy: 0.1129

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

8BR8|1|Lt|U|2640
8BR8|1|Lt|G|2641
8BR8|1|Lt|U|2642
8BR8|1|Lt|A|2643
8BR8|1|Lt|C|2644
8BR8|1|Lt|G|2645
*
8BR8|1|Lt|C|2666
8BR8|1|Lt|U|2667
8BR8|1|Lt|G|2668
8BR8|1|Lt|A|2669
8BR8|1|Lt|G|2670

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LX

Ribosomal protein L24