IL_8BR8_106
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_106 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.1171
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.3
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 47
Unit IDs
8BR8|1|Lt|A|2650
8BR8|1|Lt|G|2651
8BR8|1|Lt|A|2652
8BR8|1|Lt|G|2653
*
8BR8|1|Lt|C|2659
8BR8|1|Lt|G|2660
8BR8|1|Lt|A|2661
8BR8|1|Lt|U|2662
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LS
- Ribosomal protein L19
- Chain LV
- Ribosomal L22e
- Chain LX
- Ribosomal protein L24
- Chain SI
- 40S ribosomal protein S8
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