IL_8BR8_114

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGACACC*GCCAAGAC

Length

15 nucleotides

Bulged bases

8BR8|1|St|G|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_114 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2014

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8BR8|1|St|G|127
8BR8|1|St|G|128
8BR8|1|St|A|129
8BR8|1|St|C|130
8BR8|1|St|A|131
8BR8|1|St|C|132
8BR8|1|St|C|133
*
8BR8|1|St|G|148
8BR8|1|St|C|149
8BR8|1|St|C|150
8BR8|1|St|A|151
8BR8|1|St|A|152
8BR8|1|St|G|153
8BR8|1|St|A|154
8BR8|1|St|C|155

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain Sb

Ribosomal protein S24