IL_8BR8_120

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAG*CGACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_120 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.2487

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BR8|1|St|G|276
8BR8|1|St|A|277
8BR8|1|St|G|278
*
8BR8|1|St|C|289
8BR8|1|St|G|290
8BR8|1|St|A|291
8BR8|1|St|C|292
8BR8|1|St|U|293
8BR8|1|St|C|294

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SK

Ribosomal protein S9

Chain SO

Ribosomal protein S23