IL_8BR8_121

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_121 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2961

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8BR8|1|St|C|324
8BR8|1|St|A|325
8BR8|1|St|U|326
*
8BR8|1|St|A|333
8BR8|1|St|C|334
8BR8|1|St|G|335

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LW

Ribosomal protein L23

Chain SG

40S ribosomal protein S6