IL_8BR8_131

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GC*GGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_131 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.1445

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8BR8|1|St|G|525
8BR8|1|St|C|526
*
8BR8|1|St|G|576
8BR8|1|St|G|577
8BR8|1|St|A|578
8BR8|1|St|C|579

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SJ

Ribosomal protein S15A

Chain SM

Ribosomal protein S11

Chain SO

Ribosomal protein S23