IL_8BR8_140

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUACC*GAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_140 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.384

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8BR8|1|St|G|639
8BR8|1|St|U|640
8BR8|1|St|A|641
8BR8|1|St|C|642
8BR8|1|St|C|643
*
8BR8|1|St|G|677
8BR8|1|St|A|678
8BR8|1|St|G|679
8BR8|1|St|A|680
8BR8|1|St|C|681

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain SD

40S ribosomal protein S3a

Chain SQ

Ribosomal protein S14