IL_8BR8_142

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGGAC*GGAUGAUC

Length

13 nucleotides

Bulged bases

8BR8|1|St|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_142 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.1319

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

8BR8|1|St|G|649
8BR8|1|St|G|650
8BR8|1|St|G|651
8BR8|1|St|A|652
8BR8|1|St|C|653
*
8BR8|1|St|G|664
8BR8|1|St|G|665
8BR8|1|St|A|666
8BR8|1|St|U|667
8BR8|1|St|G|668
8BR8|1|St|A|669
8BR8|1|St|U|670
8BR8|1|St|C|671

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SD

40S ribosomal protein S3a

Chain SQ

Ribosomal protein S14