IL_8BR8_148

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_148 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1131

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8BR8|1|St|G|855
8BR8|1|St|G|856
8BR8|1|St|A|857
8BR8|1|St|G|858
8BR8|1|St|U|859
8BR8|1|St|A|860
8BR8|1|St|U|861
8BR8|1|St|G|862
*
8BR8|1|St|U|873
8BR8|1|St|G|874
8BR8|1|St|A|875
8BR8|1|St|A|876
8BR8|1|St|A|877
8BR8|1|St|C|878

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lo

60S ribosomal protein L41

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein S23