IL_8BR8_158

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8BR8|1|St|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_158 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.116

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8BR8|1|St|U|1014
8BR8|1|St|G|1015
8BR8|1|St|C|1016
8BR8|1|St|A|1017
8BR8|1|St|U|1018
*
8BR8|1|St|A|1142
8BR8|1|St|U|1143
8BR8|1|St|G|1144

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SC

Ribosomal protein S3

Chain SL

Ribosomal protein S10B

Chain SX

Ribosomal protein S20

Chain Sh

Ribosomal protein S29A