IL_8BR8_160

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8BR8|1|St|A|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_160 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.1509

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BR8|1|St|C|1022
8BR8|1|St|G|1023
*
8BR8|1|St|C|1132
8BR8|1|St|A|1133
8BR8|1|St|G|1134

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SB

Ribosomal protein S2

Chain SC

Ribosomal protein S3

Chain ST

Ribosomal protein S16

Chain SX

Ribosomal protein S20

Chain Sh

Ribosomal protein S29A