IL_8BR8_161

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_161 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1996

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8BR8|1|St|C|1031
8BR8|1|St|C|1032
8BR8|1|St|C|1033
*
8BR8|1|St|G|1066
8BR8|1|St|A|1067
8BR8|1|St|G|1068

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SB

Ribosomal protein S2

Chain SC

Ribosomal protein S3

Chain SU

Ribosomal protein S17