IL_8BR8_176

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUG*UG

Length

5 nucleotides

Bulged bases

8BR8|1|St|U|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_176 not in the Motif Atlas

Homologous match to IL_4V88_469

Geometric discrepancy: 0.1792

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BR8|1|St|C|1344
8BR8|1|St|U|1345
8BR8|1|St|G|1346
*
8BR8|1|St|U|1398
8BR8|1|St|G|1399

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LW

Ribosomal protein L23

Chain Lo

60S ribosomal protein L41

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein S23