IL_8BR8_188

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGG*CGCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_188 not in the Motif Atlas

Geometric match to IL_6CK5_011

Geometric discrepancy: 0.3227

The information below is about IL_6CK5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60572.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8BR8|1|St|C|587
8BR8|1|St|G|588
8BR8|1|St|G|589
*
8BR8|1|St|C|604
8BR8|1|St|G|605
8BR8|1|St|C|606
8BR8|1|St|C|607
8BR8|1|St|G|608

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain LS

Ribosomal protein L19

Chain SH

40S ribosomal protein S7