IL_8BRM_021
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GAAAG*CUGGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8BRM|1|Lt|G|650, 8BRM|1|Lt|G|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_021 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1319
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BRM|1|Lt|G|522
8BRM|1|Lt|A|523
8BRM|1|Lt|A|524
8BRM|1|Lt|A|525
8BRM|1|Lt|G|526
*
8BRM|1|Lt|C|648
8BRM|1|Lt|U|649
8BRM|1|Lt|G|650
8BRM|1|Lt|G|651
8BRM|1|Lt|U|652
8BRM|1|Lt|A|653
8BRM|1|Lt|G|654
8BRM|1|Lt|C|655
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LM
- Ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Lb
- Ribosomal protein L27a
- Chain Lk
- Ribosomal protein L37
Coloring options: