IL_8BRM_036
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCUC*GACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_036 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2042
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
8BRM|1|Lt|C|830
8BRM|1|Lt|C|831
8BRM|1|Lt|U|832
8BRM|1|Lt|C|833
*
8BRM|1|Lt|G|845
8BRM|1|Lt|A|846
8BRM|1|Lt|C|847
8BRM|1|Lt|G|848
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LE
- 5S ribosomal RNA; 5S rRNA
- Chain LH
- Ribosomal protein L7
- Chain LU
- Ribosomal protein L21
- Chain Lc
- Ribosomal protein L29
Coloring options: