IL_8BRM_038
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGCGCCGC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BRM_038 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.2806
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8BRM|1|Lt|U|883
8BRM|1|Lt|G|884
8BRM|1|Lt|C|885
8BRM|1|Lt|G|886
8BRM|1|Lt|C|887
8BRM|1|Lt|C|888
8BRM|1|Lt|G|889
8BRM|1|Lt|C|890
*
8BRM|1|Lt|G|1025
8BRM|1|Lt|A|1026
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LH
- Ribosomal protein L7
- Chain LP
- Ribosomal protein L13a
- Chain LT
- Ribosomal protein L18a
- Chain Lg
- Ribosomal protein L35a
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