IL_8BRM_045

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCAGUAG*CGAGCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_045 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1434

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8BRM|1|Lt|G|1132
8BRM|1|Lt|C|1133
8BRM|1|Lt|A|1134
8BRM|1|Lt|G|1135
8BRM|1|Lt|U|1136
8BRM|1|Lt|A|1137
8BRM|1|Lt|G|1138
*
8BRM|1|Lt|C|1842
8BRM|1|Lt|G|1843
8BRM|1|Lt|A|1844
8BRM|1|Lt|G|1845
8BRM|1|Lt|C|1846
8BRM|1|Lt|C|1847

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LD

5.8S rRNA

Chain LQ

Ribosomal protein L17