IL_8BRM_109

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CACC*GG

Length

6 nucleotides

Bulged bases

8BRM|1|St|A|101, 8BRM|1|St|C|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_109 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.265

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BRM|1|St|C|100
8BRM|1|St|A|101
8BRM|1|St|C|102
8BRM|1|St|C|103
*
8BRM|1|St|G|215
8BRM|1|St|G|216

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

Ribosomal protein S4

Chain SI

Ribosomal protein S8

Chain SM

Ribosomal protein S11