IL_8BRM_123

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8BRM|1|St|A|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_123 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1365

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|G|442
8BRM|1|St|U|443
8BRM|1|St|G|444
8BRM|1|St|C|445
8BRM|1|St|C|446
8BRM|1|St|A|447
8BRM|1|St|G|448
*
8BRM|1|St|C|455
8BRM|1|St|G|456
8BRM|1|St|G|457
8BRM|1|St|U|458
8BRM|1|St|A|459
8BRM|1|St|A|460
8BRM|1|St|U|461
8BRM|1|St|U|462
8BRM|1|St|C|463

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SC

Ribosomal protein S3

Chain SO

Ribosomal protein S23

Chain Sj

Ribosomal protein S30