IL_8BRM_124

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUUGAAA*UC

Length

9 nucleotides

Bulged bases

8BRM|1|St|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_124 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.135

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|G|496
8BRM|1|St|U|497
8BRM|1|St|U|498
8BRM|1|St|G|499
8BRM|1|St|A|500
8BRM|1|St|A|501
8BRM|1|St|A|502
*
8BRM|1|St|U|848
8BRM|1|St|C|849

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SO

Ribosomal protein S23

Chain Sd

Ribosomal protein S26