IL_8BRM_148

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8BRM|1|St|C|902, 8BRM|1|St|C|903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_148 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1747

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

8BRM|1|St|A|901
8BRM|1|St|C|902
8BRM|1|St|C|903
8BRM|1|St|A|904
*
8BRM|1|St|U|1305
8BRM|1|St|C|1306
8BRM|1|St|C|1307
8BRM|1|St|C|1308
8BRM|1|St|U|1309

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SF

Ribosomal protein S5

Chain ST

Ribosomal protein S16

Chain Sg

Ribosomal protein S28