IL_8BRM_190

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGGAGGACCG*CGCGAUCG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_190 not in the Motif Atlas

Homologous match to IL_8P9A_470

Geometric discrepancy: 0.5869

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06668.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BRM|1|St|C|967
8BRM|1|St|G|968
8BRM|1|St|G|969
8BRM|1|St|A|970
8BRM|1|St|G|971
8BRM|1|St|G|972
8BRM|1|St|A|973
8BRM|1|St|C|974
8BRM|1|St|C|975
8BRM|1|St|G|976
*
8BRM|1|St|C|994
8BRM|1|St|G|995
8BRM|1|St|C|996
8BRM|1|St|G|997
8BRM|1|St|A|998
8BRM|1|St|U|999
8BRM|1|St|C|1000
8BRM|1|St|G|1001

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SL

Ribosomal protein S10B

Chain Sh

Ribosomal protein S29A