IL_8BRM_192

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

8BRM|1|St|C|1016, 8BRM|1|St|U|1138, 8BRM|1|St|G|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BRM_192 not in the Motif Atlas

Homologous match to IL_8P9A_439

Geometric discrepancy: 0.2997

The information below is about IL_8P9A_439

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99893.1

Basepair signature

cWW-tHS-tWH-cWH-cWW-L-L-cWW

Number of instances in this motif group

2

Unit IDs

8BRM|1|St|U|1014
8BRM|1|St|G|1015
8BRM|1|St|C|1016
8BRM|1|St|A|1017
8BRM|1|St|U|1018
8BRM|1|St|G|1019
8BRM|1|St|G|1020
*
8BRM|1|St|U|1136
8BRM|1|St|C|1137
8BRM|1|St|U|1138
8BRM|1|St|G|1139
8BRM|1|St|U|1140
8BRM|1|St|G|1141
8BRM|1|St|A|1142
8BRM|1|St|U|1143
8BRM|1|St|G|1144

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SC

Ribosomal protein S3

Chain SL

Ribosomal protein S10B

Chain SX

Ribosomal protein S20

Chain Sh

Ribosomal protein S29A