IL_8BTK_006
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUCUAAG*CUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_006 not in the Motif Atlas
- Geometric match to IL_5TBW_043
- Geometric discrepancy: 0.3393
- The information below is about IL_5TBW_043
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_71110.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8BTK|1|A2|G|56
8BTK|1|A2|U|57
8BTK|1|A2|C|58
8BTK|1|A2|U|59
8BTK|1|A2|A|60
8BTK|1|A2|A|61
8BTK|1|A2|G|62
*
8BTK|1|A2|C|86
8BTK|1|A2|U|87
8BTK|1|A2|G|88
8BTK|1|A2|C|89
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- 40S ribosomal protein S4
- Chain Af
- 40S ribosomal protein S6
- Chain Ax
- 40S ribosomal protein S24
Coloring options: