IL_8BTK_020
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8BTK|1|A2|U|362, 8BTK|1|A2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_020 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1104
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8BTK|1|A2|U|360
8BTK|1|A2|A|361
8BTK|1|A2|U|362
8BTK|1|A2|C|363
8BTK|1|A2|A|364
8BTK|1|A2|A|365
*
8BTK|1|A2|U|397
8BTK|1|A2|G|398
8BTK|1|A2|A|399
8BTK|1|A2|C|400
8BTK|1|A2|C|401
8BTK|1|A2|A|402
8BTK|1|A2|C|403
8BTK|1|A2|G|404
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ah
- 40S ribosomal protein S8
- Chain Ak
- 40S ribosomal protein S11
- Chain Aw
- 40S ribosomal protein S23
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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