IL_8BTK_032

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

8BTK|1|A2|A|629

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_032 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.2095

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BTK|1|A2|G|612
8BTK|1|A2|U|613
8BTK|1|A2|G|614
8BTK|1|A2|C|615
8BTK|1|A2|C|616
8BTK|1|A2|A|617
8BTK|1|A2|G|618
*
8BTK|1|A2|C|625
8BTK|1|A2|G|626
8BTK|1|A2|G|627
8BTK|1|A2|OMU|628
8BTK|1|A2|A|629
8BTK|1|A2|A|630
8BTK|1|A2|U|631
8BTK|1|A2|U|632
8BTK|1|A2|C|633

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23