IL_8BTK_055
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_055 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.0925
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8BTK|1|A2|C|1048
8BTK|1|A2|G|1049
8BTK|1|A2|A|1050
8BTK|1|A2|A|1051
8BTK|1|A2|G|1052
*
8BTK|1|A2|C|1068
8BTK|1|A2|G|1069
8BTK|1|A2|U|1070
8BTK|1|A2|A|1071
8BTK|1|A2|G|1072
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- eS26
- Chain An
- 40S ribosomal protein S14
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- 60S ribosomal protein L8
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