IL_8BTK_080

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8BTK|1|A2|C|1434, 8BTK|1|A2|C|1435, 8BTK|1|A2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_080 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2608

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BTK|1|A2|U|1409
8BTK|1|A2|A|1410
*
8BTK|1|A2|U|1433
8BTK|1|A2|C|1434
8BTK|1|A2|C|1435
8BTK|1|A2|C|1436
8BTK|1|A2|C|1437
8BTK|1|A2|C|1438
8BTK|1|A2|A|1439

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ap

uS9

Chain At

40S ribosomal protein uS10