IL_8BTK_169
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8BTK|1|B5|A|1592, 8BTK|1|B5|A|1593
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_169 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.1162
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BTK|1|B5|G|1579
8BTK|1|B5|OMG|1580
8BTK|1|B5|G|1581
*
8BTK|1|B5|U|1591
8BTK|1|B5|A|1592
8BTK|1|B5|A|1593
8BTK|1|B5|U|1594
8BTK|1|B5|C|1595
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BA
- 60S ribosomal protein L8
- Chain BK
- Nascent chain
- Chain BN
- Ribosomal protein L15
- Chain BP
- uL22
- Chain Bj
- Ribosomal protein L37
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