IL_8BTK_187
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8BTK|1|B5|U|1869, 8BTK|1|B5|C|1870, 8BTK|1|B5|G|1994, 8BTK|1|B5|A|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_187 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2321
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BTK|1|B5|C|1865
8BTK|1|B5|U|1866
8BTK|1|B5|C|1867
8BTK|1|B5|A|1868
8BTK|1|B5|U|1869
8BTK|1|B5|C|1870
8BTK|1|B5|A|1871
8BTK|1|B5|G|1872
*
8BTK|1|B5|C|1992
8BTK|1|B5|U|1993
8BTK|1|B5|G|1994
8BTK|1|B5|G|1995
8BTK|1|B5|A|1996
8BTK|1|B5|G|1997
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BH
- 60S ribosomal protein L9
- Chain BM
- Ribosomal protein L14
- Chain BO
- 60S ribosomal protein L13a
- Chain BS
- 60S ribosomal protein L18a
- Chain Bm
- Ubiquitin
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