IL_8BTK_206

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_206 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2127

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8BTK|1|B5|C|2432
8BTK|1|B5|G|2433
8BTK|1|B5|A|2434
8BTK|1|B5|U|2435
8BTK|1|B5|C|2436
*
8BTK|1|B5|G|2595
8BTK|1|B5|G|2596
8BTK|1|B5|G|2597
8BTK|1|B5|A|2598
8BTK|1|B5|G|2599

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34