IL_8BTK_211
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 8BTK|1|B5|U|2504, 8BTK|1|B5|A|2517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_211 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1474
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BTK|1|B5|U|2499
8BTK|1|B5|G|2500
8BTK|1|B5|G|2501
8BTK|1|B5|A|2502
8BTK|1|B5|A|2503
8BTK|1|B5|U|2504
8BTK|1|B5|G|2505
*
8BTK|1|B5|C|2515
8BTK|1|B5|G|2516
8BTK|1|B5|A|2517
8BTK|1|B5|G|2518
8BTK|1|B5|A|2519
8BTK|1|B5|G|2520
8BTK|1|B5|A|2521
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Am
- uS15
- Chain BR
- 60S ribosomal protein L19
- Chain BZ
- 60S ribosomal protein L27
- Chain Bc
- eL30
- Chain Bg
- 60S ribosomal protein L34
- Chain Bp
- eL43
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