IL_8BTK_273
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_273 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.104
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8BTK|1|B5|C|4342
8BTK|1|B5|U|4343
8BTK|1|B5|C|4344
8BTK|1|B5|A|4345
8BTK|1|B5|G|4346
8BTK|1|B5|U|4347
8BTK|1|B5|A|4348
8BTK|1|B5|C|4349
*
8BTK|1|B5|G|4354
8BTK|1|B5|G|4355
8BTK|1|B5|A|4356
8BTK|1|B5|A|4357
8BTK|1|B5|C|4358
8BTK|1|B5|C|4359
8BTK|1|B5|G|4360
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BH
- 60S ribosomal protein L9
- Chain BV
- Ribosomal protein L23
- Chain Bm
- Ubiquitin
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