IL_8BTK_275
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGUA(PSU)(OMG)U*GCGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8BTK|1|B5|U|4380
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_275 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.3827
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BTK|1|B5|U|4378
8BTK|1|B5|G|4379
8BTK|1|B5|U|4380
8BTK|1|B5|A|4381
8BTK|1|B5|PSU|4382
8BTK|1|B5|OMG|4383
8BTK|1|B5|U|4384
*
8BTK|1|B5|G|4407
8BTK|1|B5|C|4408
8BTK|1|B5|G|4409
8BTK|1|B5|A|4410
8BTK|1|B5|A|4411
8BTK|1|B5|G|4412
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BW
- Ribosomal protein L24
- Chain Bd
- Ribosomal protein L31
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